% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/taxize-package.R
\name{taxize-defunct}
\alias{taxize-defunct}
\alias{defunct}
\title{Defunct functions in taxize}
\description{
The following functions are now defunct (no longer available):
}
\details{
\itemize{
 \item \code{\link{col_classification}}: See \code{\link{classification}}
 \item \code{\link{eol_hierarchy}}: See \code{\link{classification}}
 \item \code{\link{tp_classification}}: See \code{\link{classification}}
 \item \code{\link{tpl_search}}: Use the \pkg{Taxonstand} functions
 \code{TPL} or \code{TPLck} directly.
 \item \code{\link{get_seqs}}: This function changed name to \code{\link{ncbi_getbyname}}.
 \item \code{\link{get_genes}}: This function changed name to \code{\link{ncbi_getbyid}}.
 \item \code{\link{get_genes_avail}}: This function changed name to \code{\link{ncbi_search}}.
 \item \code{\link{ncbi_getbyname}}: See \code{ncbi_byname} in the \pkg{traits} package.
 \item \code{\link{ncbi_getbyid}}: See \code{ncbi_byid} in the \pkg{traits} package.
 \item \code{\link{ncbi_search}}: See \code{ncbi_searcher} in the \pkg{traits} package.
 \item \code{\link{eol_invasive}}: See \code{eol} in the \pkg{originr} package.
 \item \code{\link{gisd_isinvasive}}: See \code{gisd} in the \pkg{originr} package.
 \item \code{\link{ubio_classification}}:  The uBio web services was down for quite a while, is
 now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
 \item \code{\link{ubio_classification_search}}: The uBio web services was down for quite
 a while, is now (as of 2016-05-09) back up, but we don't trust that it will stay up
 and available.
 \item \code{\link{ubio_id}}: The uBio web services was down for quite a while, is
 now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
 \item \code{\link{ubio_ping}}:  The uBio web services was down for quite a while, is
 now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
 \item \code{\link{ubio_search}}:  The uBio web services was down for quite a while, is
 now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
 \item \code{\link{ubio_synonyms}}:  The uBio web services was down for quite a while, is
 now (as of 2016-05-09) back up, but we don't trust that it will stay up and available.
 \item \code{\link{get_ubioid}}: The uBio web services are apparently down indefinitely.
 \item \code{\link{phylomatic_tree}}: This function is defunct. See
 \code{phylomatic} in the package \pkg{brranching}
 \item \code{\link{phylomatic_format}}: This function is defunct. See
 \code{phylomatic_names} in the package \pkg{brranching}
}
}
