% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/add_characters.R
\name{add_characters}
\alias{add_characters}
\title{Add character data to a nexml object}
\usage{
add_characters(x, nexml = new("nexml"), append_to_existing_otus = FALSE)
}
\arguments{
\item{x}{character data, in which character traits labels are column names
and taxon labels are row names.  x can be in matrix or data.frame
format.}

\item{nexml}{a nexml object, if appending character table to an existing
nexml object.  If ommitted will initiate a new nexml object.}

\item{append_to_existing_otus}{logical. If TRUE, will add any new taxa
(taxa not matching any existing otus block) to the existing (first)
otus block.  Otherwise (default), a new otus block is created, even
though it may contain duplicate taxa to those already present.  While
FALSE is the safe option, TRUE may be appropriate when building nexml
files from scratch with both characters and trees.}
}
\description{
Add character data to a nexml object
}
\examples{
library("geiger")
data(geospiza)
geiger_nex <- add_characters(geospiza$dat)
}

