.. pymbar documentation master file, created by
   sphinx-quickstart on Mon May  5 19:35:19 2014.
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pymbar
======

Python implementation of the `multistate Bennett acceptance ratio (MBAR) <http://www.alchemistry.org/wiki/Multistate_Bennett_Acceptance_Ratio>`_ method for estimating expectations and free energy differences

Documentation
-------------


.. toctree::
   :maxdepth: 2

   getting_started
   moving_from_pymbar3
   strategies_for_solution
   mbar
   fes_with_pymbar
   other_estimators
   timeseries
   utils
   zbibliography

Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`
